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SOFTWARE
MhcValidator is a deep learning-powered tool designed to identify peptide-spectrum matches in mass spectrometry-based immunopeptidomics. It combines database search metrics with MHC interaction and presentation predictors within its discriminant function.
MhcVizPipe
MhcVizPipe is a reporting pipeline designed for visualizing and performing quality control on immunopeptidomics mass spectrometry data. It enables quick assessment and comparison of sample quality and composition across single or multiple files. Common use cases include evaluating QC samples or comparing samples during method development.
RHybridFinder is an R package for processing immuno-peptidomics mass spectrometry data to discover putative hybrid peptides. It provides computational inference of potential proteasomal spliced peptides detected by mass spectrometry, making it ideal for researchers focused on identifying spliced peptides in their data.
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